SNP Profiles matching PA 107 [PER]

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 Key

 1234567891011121314
_Input profile
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
1._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
2._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
3._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
4._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
5._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
6._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
7._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
8._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
9._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
10._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
11._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
12._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
13._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
14._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
15._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
16._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
17._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
18._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
19._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
20._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
21._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
22._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
23._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
24._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
25._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
26._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
27._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
28._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
29._PA_107_[PER]
CCAGCGTTTTCCTT_CCCCAAAGCCCT
30._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
31._PA_107_[PER]
CCAGCGTTTTCCTTTTCC_AAAGCCCT
32._GC-02-001-1-01
CCAGCGTTTTCCTTTTCC_AAAGCCCT
33._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
34._GC-02-001-1-01
CCAGCGTTTTCCTT_CCCCAAAGCCCT
35._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
36._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
37._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
38._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
39._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
40._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
41._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
42._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
43._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
44._LCT_EEN_37_/F
CCAGCGCTTTCCTTTTCCCCAAAGCCCC
45._GC-08-160-4-03
CCAGCGCTTTCCTTTTCCCCAAAGCCCC
 1516171819202122232425262728
_Input profile
AACGCTCCGGGGGGCTCCCGTTCTAAGG
1._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
2._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
3._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
4._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
5._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
6._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
7._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
8._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
9._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
10._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
11._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
12._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
13._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
14._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
15._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
16._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
17._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
18._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
19._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
20._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
21._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
22._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
23._GC-08-111-3-10
AACGCTCCGGGGGGCTCCCGTTCTAAGG
24._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
25._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
26._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
27._PA_107_[PER]
AACG_CCGGGGGGCTCCCGTTCTAAGG
28._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
29._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
30._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
31._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
32._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
33._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
34._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
35._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
36._GC-08-111-3-10
AACGCTCCGGGGGGCTCCCGTTCTAAGG
37._GC-08-111-3-10
AACG_CCGGGGGGCTCCCGTTCTAAGG
38._GC-08-111-3-10
AACGCTCCGGGGGGCTCCCGTTCTAAGG
39._GC-08-111-3-10
AACGCTCCGGGGGGCTCCCGTTCTAAGG
40._PA_107_[PER]
ATCGCTCCGGGGGGCTCCCGTTCTAAGG
41._GC-08-111-3-10
ATCGCTCCGGGGGGCTCCCGTTCTAAGG
42._PA_107_[PER]
AACGCTCCGGGGAACTCCCGTTCTAAGG
43._PA_107_[PER]
AACGCTCCGGGGAACTCCCGTTCTAAGG
44._LCT_EEN_37_/F
AACGCTCCGGGGGGCTACCGGT_AAGG
45._GC-08-160-4-03
AACGCTCCGGGGGGCTACCGGT_AAGG
 2930313233343536373839   
_Input profile
GGAACCAGCCAACTGTACATGGX_XX_XX_X
1._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
2._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
3._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
4._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
5._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
6._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
7._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
8._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
9._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
10._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
11._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
12._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
13._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
14._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
15._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
16._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
17._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
18._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
19._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
20._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
21._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
22._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
23._GC-08-111-3-10
GGAACCAGCCAACTGTACATGGX_XX_XX_X
24._PA_107_[PER]
GGAACCAGCCAA_GTACATGGX_XX_XX_X
25._PA_107_[PER]
GGAACCAGCC_CTGTACATGGX_XX_XX_X
26._PA_107_[PER]
GGAACCAGCC_CTGTACATGGX_XX_XX_X
27._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
28._PA_107_[PER]
GGAACCAGCCAACT_ACATGGX_XX_XX_X
29._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
30._PA_107_[PER]
GGAACCAGCCAA_GTACATGGX_XX_XX_X
31._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
32._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
33._GC-02-001-1-01
GGAACCAGCCAA_GTACATGGX_XX_XX_X
34._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
35._GC-02-001-1-01
GGAACCAGCCAACT_ACATGGX_XX_XX_X
36._GC-08-111-3-10
GGAACCAGCCAA_GTACATGGX_XX_XX_X
37._GC-08-111-3-10
GGAACCAGCCAACTGTACATGGX_XX_XX_X
38._GC-08-111-3-10
GGAACCAGCC_CTGTACATGGX_XX_XX_X
39._GC-08-111-3-10
GGAACCAGCC_CTGTACATGGX_XX_XX_X
40._PA_107_[PER]
GGAACCAGCC_CTGTACATGGX_XX_XX_X
41._GC-08-111-3-10
GGAACCAGCC_CTGTACATGGX_XX_XX_X
42._PA_107_[PER]
GGAACCAGCCACCTGTACATGGX_XX_XX_X
43._PA_107_[PER]
GGAACCAGCCACCTGTACATGGX_XX_XX_X
44._LCT_EEN_37_/F
GGAACCAGCCAATTTTAAATGGX_XX_XX_X
45._GC-08-160-4-03
GGAACCAGCCAATTTTAAATGGX_XX_XX_X

Input profile: PA_107_[PER]

 
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Mars Center for Cocoa Science, Brazil
Location: 2101 5
 Dapeng Zhang, 2016

1._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 10
 Dapeng Zhang, 2016

2._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 4 > FP
 Dapeng Zhang, 2016

3._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

4._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

5._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 1 > FP
 Dapeng Zhang, 2016

6._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 16
 Dapeng Zhang, 2016

7._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 15
 Dapeng Zhang, 2016

8._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 11
 Dapeng Zhang, 2016

9._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 10
 Dapeng Zhang, 2016

10._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 9
 Dapeng Zhang, 2016

11._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

12._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

15._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

17._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

18._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

19._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

20._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

21._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

22._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

23._PA_107_[PER] GC-08-111-3-10

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

24._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 4 > FP
 Dapeng Zhang, 2016

25._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 14
 Dapeng Zhang, 2016

26._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 13
 Dapeng Zhang, 2016

27._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 8
 Dapeng Zhang, 2016

28._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 12
 Dapeng Zhang, 2016

29._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 8
 Dapeng Zhang, 2016

30._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 7
 Dapeng Zhang, 2016

31._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 3
 Dapeng Zhang, 2016

32._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

33._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

34._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

35._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

36._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP1
 Mars, 2018

37._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

38._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

39._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

40._PA_107_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8310 7
 Dapeng Zhang, 2016

41._PA_107_[PER] GC-08-111-3-10

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

42._PA_107_[PER]

96.2 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 90 C0213 2B
 Dapeng Zhang, 2016

43._PA_107_[PER]

96.2 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 284
 Dapeng Zhang, 2016

44._LCT_EEN_37_/F

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 3
 Dapeng Zhang, 2016

45._LCT_EEN_37_/F GC-08-160-4-03

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25